"The true mystery of the world is in visible, not in invisible"
-- Oscar Wilde
Brain Imaging Informatics is dedicated to design of automatic image analysis and visualization methods and technologies of brain imaging with special emphasis on microscopy. Recent progress in imaging technologies, including MRI and fMRI of human brain, increased the demand for
What is wrong with the HBP’s “BigBrain Viewer”? I decided to post the description of “Qute Brain Browser” after I saw quite disappointing interface presented by HBP-sponsored BigBrain Viewer, developed using Neuroglancer (open-source WebGL viewer for volumetric data). To avoid possible misunderstandings
The main part of presented algorithm is sequential homotopic thinning transformation, “invented” by a group of mathematicians, including F. Meyer (1976), Ch. Lantuejoul (1978), and headed by J.Serra, from Center for Mathematical Morphology, Fontainebleau, France. Many transformations based on thinning
High-resolution Nissl-stained sections of human brain were downloaded from Allen Brain Atlases portal using published API. Image resolution was 1 micrometer or better. Depending upon the section region, total size of JPEG files varied from 300MB to 1.5 GB. Between
Based on preliminary results of regression analysis, it seems possible to conclude that our initial hypothesis (here) was true: rich-club members areas differ from non-members by different topology of clusterization pattern. Cluster population regression data show that “rich-club” member candidates