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Brain Imaging Informatics

Design of Computer Vision and Image Analysis Technologies for Cytoarchitectonic Studies

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Brain Imaging Informatics

Mouse brain neurons segmentation and counting

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  • Bits of history of selected methods of quantitative cytoarchitectonic studies
    • The story of MCG: lost opportunity.
    • The story of Grey Level Index: forty years of misleading consistency?
  • Segmentation of cell bodies in serial sections of human neocortex
    • Nissl-stained sections segmentation using algorithms of Mathematical Morphology
    • Neurons segmentation using UNET CNN in Sony Neural Network Console
    • Semantic segmentation of human brain cortex with UNET-like architecture using SONY Neural Network Console
  • Mouse brain neurons segmentation and counting
  • Gallery of profiles of some areas of human brain cortex
  • Analysis of neuronal clustering
    • Distance map with isotropic structuring element
    • Comparison of anisotropic distance maps for areas 10m and 37.
    • “Rich-club” member candidates areas form a distinct group
  • “Qute Brain Browser” – 3D Brain Viewer
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